| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tatcggaa | 8 | ||
| VMR_0112 | ebv-miR-bart18-3p | 1 | ........ | 8 | 100 |
| VMR_1004 | rlcv-miR-rl1-24-3p | 1 | ......._ | 7 | 87 |
| VMR_1222 | tumv-miR-s41 | 1 | _......_ | 6 | 75 |
| VMR_0905 | rcmv-miR-r111.2-3 | 2 | _......_ | 7 | 75 |
| VMR_0904 | rcmv-miR-r111.2-3 | 1 | _......_ | 6 | 75 |
| VMR_0903 | rcmv-miR-r111.2-3 | 2 | _......_ | 7 | 75 |
| VMR_0359 | hvt-miR-h15* | 1 | __...... | 6 | 75 |
