| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tattctgc | 8 | ||
| VMR_1232 | tumv-miR-s50 | 1 | ........ | 8 | 100 |
| VMR_1011 | rlcv-miR-rl1-2-5p | 3 | _......_ | 8 | 75 |
| VMR_1010 | rlcv-miR-rl1-2-5p | 3 | _......_ | 8 | 75 |
| VMR_0406 | kshv-miR-k12-4-3p | 7 | ......__ | 2 | 75 |
| VMR_0145 | ebv-miR-bhrf1-2-5p* | 3 | _......_ | 8 | 75 |
| VMR_0143 | ebv-miR-bhrf1-2* | 3 | _......_ | 8 | 75 |
