| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcaccaac | 8 | ||
| VMR_1274 | wssv-miR143 | 1 | ........ | 8 | 100 |
| VMR_1268 | tumv-miR-s9 | 7 | _....... | 1 | 87 |
| VMR_1249 | tumv-miR-s66 | 7 | _....... | 1 | 87 |
| VMR_0552 | mghv-miR-m1-8* | 1 | .g...... | 8 | 87 |
| VMR_1207 | tumv-miR-s28 | 6 | ......__ | 1 | 75 |
| VMR_0984 | rlcv-miR-rl1-19-3p | 3 | ......__ | 8 | 75 |
| VMR_0986 | rlcv-miR-rl1-19-3p | 2 | ......__ | 7 | 75 |
| VMR_0985 | rlcv-miR-rl1-19-3p | 2 | ......__ | 7 | 75 |
| VMR_0983 | rlcv-miR-rl1-19-3p | 3 | ......__ | 8 | 75 |
| VMR_0532 | mghv-miR-m1-12 | 7 | _......_ | 2 | 75 |
| VMR_0441 | mcmv-miR-m55-1 | 6 | ......__ | 1 | 75 |
| VMR_0391 | kshv-miR-k10b_+1_5 | 6 | _......_ | 1 | 75 |
| VMR_0285 | hsv1-miR-55593 | 3 | ......__ | 8 | 75 |
| VMR_0226 | hcmv-miR-ul22a* | 1 | ......__ | 6 | 75 |
