| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcacgagc | 8 | ||
| VMR_0431 | mcmv-miR-m108-1* | 1 | ........ | 8 | 100 |
| VMR_0330 | hsv2-miR-h23* | 1 | __...... | 6 | 75 |
| VMR_0267 | hpv38-miR-h1 | 2 | ......__ | 7 | 75 |
| VMR_0021 | bhv1-miR-b1 | 2 | _......_ | 7 | 75 |
