| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcagcgcg | 8 | ||
| VMR_0271 | hsv1-miR-105617b | 1 | ........ | 8 | 100 |
| VMR_0699 | prv-miR-4-5p | 1 | ......t. | 8 | 87 |
| VMR_0385 | iltv-miR-i6 | 7 | ......__ | 2 | 75 |
| VMR_0349 | hvsa-miR-hsur5-5p | 8 | __...... | 3 | 75 |
| VMR_0299 | hsv1-miR-h17 | 8 | _......_ | 3 | 75 |
