| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tccagtc | 7 | ||
| VMR_0491 | mdv2-miR-m16 | 2 | ....... | 8 | 100 |
| VMR_1023 | rlcv-miR-rl1-29-5p | 1 | _...... | 6 | 85 |
| VMR_1022 | rlcv-miR-rl1-29-5p | 1 | _...... | 6 | 85 |
| VMR_0288 | hsv1-miR-69853 | 8 | _...... | 3 | 85 |
| VMR_0140 | ebv-miR-bart9* | 7 | ......_ | 2 | 85 |
