| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tccatct | 7 | ||
| VMR_1248 | tumv-miR-s65 | 2 | ....... | 8 | 100 |
| VMR_1206 | tumv-miR-s27 | 7 | ......_ | 2 | 85 |
| VMR_1190 | tumv-miR-s12 | 7 | ......_ | 2 | 85 |
| VMR_0977 | rlcv-miR-rl1-17-5p | 7 | ......_ | 2 | 85 |
| VMR_1041 | rlcv-miR-rl1-34-5p | 7 | _...... | 2 | 85 |
| VMR_1040 | rlcv-miR-rl1-34-5p | 7 | _...... | 2 | 85 |
| VMR_0978 | rlcv-miR-rl1-17-5p | 7 | ......_ | 2 | 85 |
| VMR_0742 | prv-miR-5-5p | 8 | ......_ | 3 | 85 |
| VMR_0737 | prv-miR-5-5p | 7 | ......_ | 2 | 85 |
| VMR_0525 | mdv2-miR-m32* | 3 | ......_ | 8 | 85 |
| VMR_0490 | mdv2-miR-m15* | 6 | ......_ | 1 | 85 |
| VMR_0338 | hsv2-miR-h6* | 2 | _...... | 7 | 85 |
| VMR_0290 | hsv1-miR-h1 | 6 | ......_ | 1 | 85 |
| VMR_0257 | hhv6b-miR-ro6-4* | 8 | ......_ | 3 | 85 |
