| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcccccg | 7 | ||
| VMR_0843 | prv-miR-9-3p | 2 | ....... | 8 | 100 |
| VMR_0840 | prv-miR-9-3p | 2 | ....... | 8 | 100 |
| VMR_0837 | prv-miR-9-3p | 2 | ....... | 8 | 100 |
| VMR_0897 | rcmv-miR-r111.1-3 | 7 | _...... | 2 | 85 |
| VMR_0896 | rcmv-miR-r111.1-3 | 7 | _...... | 2 | 85 |
| VMR_0780 | prv-miR-7-5p | 6 | _...... | 1 | 85 |
| VMR_0779 | prv-miR-7-5p | 7 | _...... | 2 | 85 |
| VMR_0778 | prv-miR-7-5p | 8 | _...... | 3 | 85 |
| VMR_0776 | prv-miR-7-5p | 6 | _...... | 1 | 85 |
| VMR_0775 | prv-miR-7-5p | 8 | _...... | 3 | 85 |
| VMR_0774 | prv-miR-7-5p | 7 | _...... | 2 | 85 |
| VMR_0772 | prv-miR-7-5p | 6 | _...... | 1 | 85 |
| VMR_0771 | prv-miR-7-5p | 7 | _...... | 2 | 85 |
| VMR_0770 | prv-miR-7-5p | 8 | _...... | 3 | 85 |
| VMR_0768 | prv-miR-7-5p | 6 | _...... | 1 | 85 |
| VMR_0767 | prv-miR-7-5p | 7 | _...... | 2 | 85 |
| VMR_0766 | prv-miR-7-5p | 7 | _...... | 2 | 85 |
| VMR_0765 | prv-miR-7-5p | 8 | _...... | 3 | 85 |
| VMR_0764 | prv-miR-7-5p | 7 | _...... | 2 | 85 |
| VMR_0763 | prv-miR-7-5p | 8 | _...... | 3 | 85 |
| VMR_0761 | prv-miR-7-5p | 8 | _...... | 3 | 85 |
| VMR_0844 | prv-miR-9-3p | 1 | _...... | 6 | 85 |
| VMR_0842 | prv-miR-9-3p | 3 | ......_ | 8 | 85 |
| VMR_0839 | prv-miR-9-3p | 3 | ......_ | 8 | 85 |
| VMR_0836 | prv-miR-9-3p | 3 | ......_ | 8 | 85 |
| VMR_0834 | prv-miR-9-3p | 3 | ......_ | 8 | 85 |
| VMR_0832 | prv-miR-9-3p | 3 | ......_ | 8 | 85 |
| VMR_0399 | kshv-miR-k12-12 | 7 | ......_ | 2 | 85 |
| VMR_0318 | hsv1-miR-h8* | 2 | _...... | 7 | 85 |
| VMR_0036 | bhv5-miR-b14 | 6 | _...... | 1 | 85 |
| VMR_0033 | bhv5-miR-B11 | 7 | _...... | 2 | 85 |
| VMR_0046 | blv-miR-b3-5p | 2 | ......_ | 7 | 85 |
