| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tccgccc | 7 | ||
| VMR_0616 | prv-miR-11-1 | 2 | ....... | 8 | 100 |
| VMR_0612 | prv-miR-11-1 | 2 | ....... | 8 | 100 |
| VMR_0625 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0369 | hvt-miR-h4 | 6 | ......_ | 1 | 85 |
| VMR_0370 | hvt-miR-h4* | 6 | _...... | 1 | 85 |
| VMR_0272 | hsv1-miR-106947b | 6 | _...... | 1 | 85 |
| VMR_0300 | hsv1-miR-h18 | 2 | _...... | 7 | 85 |
