| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcctcttg | 8 | ||
| VMR_0067 | dev-miR-d1-3p | 1 | ........ | 8 | 100 |
| VMR_0111 | ebv-miR-bart17-5p | 8 | ......._ | 2 | 87 |
| VMR_0708 | prv-miR-4-5p | 8 | .a...... | 1 | 87 |
| VMR_0700 | prv-miR-4-5p | 8 | .a...... | 1 | 87 |
| VMR_0697 | prv-miR-4-5p | 8 | .a...... | 1 | 87 |
| VMR_0693 | prv-miR-4-5p | 8 | .a...... | 1 | 87 |
| VMR_1217 | tumv-miR-s37 | 6 | _......_ | 1 | 75 |
| VMR_1174 | sgiv-miR-4 | 7 | _......_ | 2 | 75 |
| VMR_0421 | mcmv-miR-m01-1 | 6 | ......__ | 1 | 75 |
