| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgacctc | 8 | ||
| VMR_0928 | rcmv-miR-r6-1 | 1 | ........ | 8 | 100 |
| VMR_0926 | rcmv-miR-r6-1 | 1 | ........ | 8 | 100 |
| VMR_0925 | rcmv-miR-r6-1 | 1 | ........ | 8 | 100 |
| VMR_0482 | mdv1-miR-m8-3p | 3 | __...... | 8 | 75 |
