| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgaggc | 7 | ||
| VMR_1196 | tumv-miR-s18 | 2 | ....... | 8 | 100 |
| VMR_0874 | prv-miR-9-5p | 1 | ......_ | 6 | 85 |
| VMR_0873 | prv-miR-9-5p | 2 | ......_ | 7 | 85 |
| VMR_0870 | prv-miR-9-5p | 1 | ......_ | 6 | 85 |
| VMR_0869 | prv-miR-9-5p | 2 | ......_ | 7 | 85 |
| VMR_0865 | prv-miR-9-5p | 1 | ......_ | 6 | 85 |
| VMR_0864 | prv-miR-9-5p | 2 | ......_ | 7 | 85 |
| VMR_0861 | prv-miR-9-5p | 1 | ......_ | 6 | 85 |
| VMR_0860 | prv-miR-9-5p | 2 | ......_ | 7 | 85 |
| VMR_0857 | prv-miR-9-5p | 1 | ......_ | 6 | 85 |
| VMR_0856 | prv-miR-9-5p | 2 | ......_ | 7 | 85 |
| VMR_0854 | prv-miR-9-5p | 1 | ......_ | 6 | 85 |
| VMR_0853 | prv-miR-9-5p | 2 | ......_ | 7 | 85 |
| VMR_0851 | prv-miR-9-5p | 1 | ......_ | 6 | 85 |
| VMR_0850 | prv-miR-9-5p | 2 | ......_ | 7 | 85 |
| VMR_0848 | prv-miR-9-5p | 1 | ......_ | 6 | 85 |
| VMR_0847 | prv-miR-9-5p | 2 | ......_ | 7 | 85 |
| VMR_0664 | prv-miR-2-3p | 1 | ......_ | 6 | 85 |
| VMR_0543 | mghv-miR-m1-4 | 1 | ......_ | 6 | 85 |
| VMR_0286 | hsv1-miR-56054b | 7 | _...... | 2 | 85 |
| VMR_0275 | hsv1-miR-114783 | 1 | _...... | 6 | 85 |
