| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgcacct | 8 | ||
| VMR_1024 | rlcv-miR-rl1-3 | 1 | ........ | 8 | 100 |
| VMR_0420 | kun-miR-1 | 8 | ......._ | 2 | 87 |
| VMR_0969 | rlcv-miR-rl1-14-3p | 1 | ......a. | 8 | 87 |
| VMR_1208 | tumv-miR-s29 | 2 | ......__ | 7 | 75 |
| VMR_1103 | rrv-miR-rr1-1-5p | 3 | ......__ | 8 | 75 |
| VMR_1055 | rlcv-miR-rl1-5-3p | 1 | _......_ | 6 | 75 |
| VMR_0892 | rcmv-miR-r111.1-1 | 1 | _......_ | 6 | 75 |
| VMR_0891 | rcmv-miR-r111.1-1 | 1 | _......_ | 6 | 75 |
| VMR_0889 | rcmv-miR-r111.1-1 | 1 | _......_ | 6 | 75 |
| VMR_0565 | ohv2-miR-17-21 | 3 | __...... | 8 | 75 |
| VMR_0319 | hsv2-miR-h10 | 7 | _......_ | 2 | 75 |
| VMR_0302 | hsv1-miR-h2* | 1 | ......__ | 6 | 75 |
| VMR_0296 | hsv1-miR-h14-5p | 3 | ......__ | 8 | 75 |
| VMR_0126 | ebv-miR-bart3-3p | 1 | _......_ | 6 | 75 |
| VMR_0124 | ebv-miR-bart3 | 1 | _......_ | 6 | 75 |
