| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgcggtc | 8 | ||
| VMR_0405 | kshv-miR-k12-3-3p | 1 | ........ | 8 | 100 |
| VMR_0404 | kshv-miR-k12-3* | 1 | ........ | 8 | 100 |
| VMR_1101 | rrv-miR-rr1-15-5p | 1 | __...... | 6 | 75 |
| VMR_1100 | rrv-miR-rr1-15-5p | 2 | __...... | 7 | 75 |
| VMR_1099 | rrv-miR-rr1-15-5p | 2 | __...... | 7 | 75 |
| VMR_1098 | rrv-miR-rr1-15-5p | 2 | __...... | 7 | 75 |
| VMR_1097 | rrv-miR-rr1-15-5p | 2 | __...... | 7 | 75 |
| VMR_1157 | rrv-miR-rr1-9-3p | 2 | __...... | 7 | 75 |
| VMR_1156 | rrv-miR-rr1-9-3p | 1 | __...... | 6 | 75 |
| VMR_1154 | rrv-miR-rr1-9-3p | 1 | __...... | 6 | 75 |
| VMR_1153 | rrv-miR-rr1-9-3p | 1 | __...... | 6 | 75 |
| VMR_1152 | rrv-miR-rr1-9-3p | 1 | __...... | 6 | 75 |
| VMR_0913 | rcmv-miR-r111.2-6 | 2 | ......__ | 7 | 75 |
| VMR_0912 | rcmv-miR-r111.2-6 | 2 | ......__ | 7 | 75 |
| VMR_0911 | rcmv-miR-r111.2-6 | 2 | ......__ | 7 | 75 |
| VMR_0432 | mcmv-miR-m108-2-5p.1 | 1 | __...... | 6 | 75 |
| VMR_0238 | hcmv-miR-us25-2-5p | 2 | __...... | 7 | 75 |
| VMR_0072 | dev-miR-d17-3p | 6 | __...... | 1 | 75 |
