| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tctctggc | 8 | ||
| VMR_0260 | hiv1-miR-tar-3p | 1 | ........ | 8 | 100 |
| VMR_0310 | hsv1-miR-h5-3p | 8 | ......a. | 1 | 87 |
| VMR_0261 | hiv1-miR-tar-5p | 3 | ......__ | 8 | 75 |
| VMR_0230 | hcmv-miR-ul69-5p | 6 | _......_ | 1 | 75 |
