| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgaaaatg | 8 | ||
| VMR_0468 | mdv1-miR-m3-5p_-1_5 | 1 | ........ | 8 | 100 |
| VMR_0467 | mdv1-miR-m3-5p | 2 | ......._ | 8 | 87 |
| VMR_0464 | mdv1-miR-m3 | 2 | ......._ | 8 | 87 |
| VMR_1298 | wssv-miR5-5p | 6 | __...... | 1 | 75 |
| VMR_0123 | ebv-miR-bart2-5p | 7 | _......_ | 2 | 75 |
| VMR_0116 | ebv-miR-bart2 | 7 | _......_ | 2 | 75 |
