| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgatggtt | 8 | ||
| VMR_0410 | kshv-miR-k12-6-3p | 1 | ........ | 8 | 100 |
| VMR_1206 | tumv-miR-s27 | 1 | ......a. | 8 | 87 |
| VMR_1190 | tumv-miR-s12 | 1 | ......a. | 8 | 87 |
| VMR_0977 | rlcv-miR-rl1-17-5p | 1 | ......__ | 6 | 75 |
| VMR_0978 | rlcv-miR-rl1-17-5p | 1 | ......__ | 6 | 75 |
| VMR_0470 | mdv1-miR-m4* | 2 | __...... | 7 | 75 |
