| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgcttgt | 7 | ||
| VMR_0589 | ohv2-miR-ov2-1 | 2 | ....... | 8 | 100 |
| VMR_0451 | mdv1-miR-m1 | 1 | ....... | 7 | 100 |
| VMR_0388 | jcv-miR-j1-3p | 1 | ......_ | 6 | 85 |
| VMR_0245 | hcmv-miR-us5-1 | 8 | _...... | 3 | 85 |
| VMR_0038 | bkv-miR-b1-3p | 1 | ......_ | 6 | 85 |
