| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggaagaa | 8 | ||
| VMR_0450 | mcv-miR-m1-5p | 1 | ........ | 8 | 100 |
| VMR_1213 | tumv-miR-s33 | 1 | .t...... | 8 | 87 |
| VMR_0930 | rcmv-miR-r87-1 | 1 | .c...... | 8 | 87 |
| VMR_0929 | rcmv-miR-r87-1 | 1 | .c...... | 8 | 87 |
| VMR_1290 | wssv-miR214 | 3 | __...... | 8 | 75 |
| VMR_1289 | wssv-miR212 | 8 | __...... | 3 | 75 |
| VMR_1280 | wssv-miR162 | 3 | __...... | 8 | 75 |
| VMR_1019 | rlcv-miR-rl1-28-5p | 1 | ......__ | 6 | 75 |
| VMR_1020 | rlcv-miR-rl1-28-5p | 1 | ......__ | 6 | 75 |
| VMR_0931 | rcmv-miR-r87-1 | 1 | __...... | 6 | 75 |
| VMR_0648 | prv-miR-11-1 | 3 | _......_ | 8 | 75 |
| VMR_0640 | prv-miR-11-1 | 2 | _......_ | 7 | 75 |
| VMR_0634 | prv-miR-11-1 | 2 | _......_ | 7 | 75 |
| VMR_0535 | mghv-miR-m1-13-5p | 3 | _......_ | 8 | 75 |
| VMR_0490 | mdv2-miR-m15* | 3 | ......__ | 8 | 75 |
| VMR_0402 | kshv-miR-k12-2* | 8 | _......_ | 3 | 75 |
| VMR_0383 | iltv-miR-i5 | 2 | __...... | 7 | 75 |
| VMR_0337 | hsv2-miR-h6 | 3 | ......__ | 8 | 75 |
| VMR_0314 | hsv1-miR-h6-5p | 3 | ......__ | 8 | 75 |
| VMR_0290 | hsv1-miR-h1 | 3 | ......__ | 8 | 75 |
