| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggctcgg | 8 | ||
| VMR_0289 | hsv1-miR-92944 | 1 | ........ | 8 | 100 |
| VMR_0882 | rcmv-miR-orilyt-2 | 1 | ......._ | 7 | 87 |
| VMR_0881 | rcmv-miR-orilyt-2 | 1 | ......._ | 7 | 87 |
| VMR_0606 | prv-miR-10-1 | 7 | _....... | 1 | 87 |
| VMR_0603 | prv-miR-10-1 | 7 | _....... | 1 | 87 |
| VMR_0600 | prv-miR-10-1 | 7 | _....... | 1 | 87 |
| VMR_0598 | prv-miR-10-1 | 7 | _....... | 1 | 87 |
| VMR_0595 | prv-miR-10-1 | 7 | _....... | 1 | 87 |
| VMR_0591 | prv-miR-10-1 | 7 | _....... | 1 | 87 |
| VMR_0590 | prv-miR-10-1 | 7 | _....... | 1 | 87 |
| VMR_0762 | prv-miR-7-5p | 2 | __...... | 7 | 75 |
| VMR_0760 | prv-miR-7-5p | 2 | __...... | 7 | 75 |
| VMR_0759 | prv-miR-7-5p | 2 | __...... | 7 | 75 |
| VMR_0604 | prv-miR-10-1 | 6 | _......_ | 1 | 75 |
| VMR_0601 | prv-miR-10-1 | 6 | _......_ | 1 | 75 |
| VMR_0599 | prv-miR-10-1 | 6 | _......_ | 1 | 75 |
| VMR_0596 | prv-miR-10-1 | 6 | _......_ | 1 | 75 |
| VMR_0592 | prv-miR-10-1 | 6 | _......_ | 1 | 75 |
| VMR_0051 | blv-miR-b5-3p | 8 | _......_ | 3 | 75 |
