| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgggaaga | 8 | ||
| VMR_0535 | mghv-miR-m1-13-5p | 1 | ........ | 8 | 100 |
| VMR_0648 | prv-miR-11-1 | 3 | __...... | 8 | 75 |
| VMR_0640 | prv-miR-11-1 | 2 | __...... | 7 | 75 |
| VMR_0634 | prv-miR-11-1 | 2 | __...... | 7 | 75 |
| VMR_0450 | mcv-miR-m1-5p | 2 | __...... | 7 | 75 |
| VMR_0402 | kshv-miR-k12-2* | 8 | __...... | 3 | 75 |
| VMR_0341 | hsv2-miR-h9-3p | 6 | ......__ | 1 | 75 |
| VMR_0313 | hsv1-miR-h6-3p | 8 | _......_ | 3 | 75 |
| VMR_0312 | hsv1-miR-h6 | 8 | _......_ | 3 | 75 |
| VMR_0070 | dev-miR-d1-5p | 2 | ......__ | 7 | 75 |
