Result for your query miRNA sequence
>kshv-miR-k12-12
ugggggag
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap 


Acc numbermiRNAStartAlignmentEnd% Identity
Query1tgggggag8
VMR_0399  kshv-miR-k12-12 1........8100
VMR_0843  prv-miR-9-3p 7_.......187
VMR_0842  prv-miR-9-3p 8_.......287
VMR_0840  prv-miR-9-3p 7_.......187
VMR_0839  prv-miR-9-3p 8_.......287
VMR_0837  prv-miR-9-3p 7_.......187
VMR_0836  prv-miR-9-3p 8_.......287
VMR_0834  prv-miR-9-3p 8_.......287
VMR_0832  prv-miR-9-3p 8_.......287
VMR_0819  prv-miR-8-5p 1......c.887
VMR_0817  prv-miR-8-5p 1......c.887
VMR_0813  prv-miR-8-5p 1......c.887
VMR_0810  prv-miR-8-5p 1......c.887
VMR_0804  prv-miR-8-5p 1......c.887
VMR_0795  prv-miR-8-5p 1......c.887
VMR_0178  hbv-miR-b22-3p 1.a......887
VMR_0177  hbv-miR-b22-3p 1.a......887
VMR_1122  rrv-miR-rr1-4-5p 2__......775
VMR_1119  rrv-miR-rr1-4-5p 2__......775
VMR_1113  rrv-miR-rr1-4 2__......775
VMR_0997  rlcv-miR-rl1-22-5p 3......__875
VMR_0995  rlcv-miR-rl1-22-5p 3......__875
VMR_0818  prv-miR-8-5p 2......__775
VMR_0816  prv-miR-8-5p 2......__775
VMR_0812  prv-miR-8-5p 2......__775
VMR_0809  prv-miR-8-5p 2......__775
VMR_0803  prv-miR-8-5p 2......__775
VMR_0799  prv-miR-8-5p 2......__775
VMR_0797  prv-miR-8-5p 2......__775
VMR_0841  prv-miR-9-3p 8__......375
VMR_0838  prv-miR-9-3p 8__......375
VMR_0835  prv-miR-9-3p 8__......375
VMR_0833  prv-miR-9-3p 8__......375
VMR_0465  mdv1-miR-m3* 1......__675
VMR_0438  mcmv-miR-m23-2 2......__775
VMR_0249  hcv-miR-199a* 6__......175
VMR_0046  blv-miR-b3-5p 7_......_275