| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgggggcg | 8 | ||
| VMR_0819 | prv-miR-8-5p | 1 | ........ | 8 | 100 |
| VMR_0817 | prv-miR-8-5p | 1 | ........ | 8 | 100 |
| VMR_0813 | prv-miR-8-5p | 1 | ........ | 8 | 100 |
| VMR_0810 | prv-miR-8-5p | 1 | ........ | 8 | 100 |
| VMR_0804 | prv-miR-8-5p | 1 | ........ | 8 | 100 |
| VMR_0795 | prv-miR-8-5p | 1 | ........ | 8 | 100 |
| VMR_0820 | prv-miR-8-5p | 1 | _....... | 7 | 87 |
| VMR_0818 | prv-miR-8-5p | 2 | ......._ | 8 | 87 |
| VMR_0816 | prv-miR-8-5p | 2 | ......._ | 8 | 87 |
| VMR_0812 | prv-miR-8-5p | 2 | ......._ | 8 | 87 |
| VMR_0809 | prv-miR-8-5p | 2 | ......._ | 8 | 87 |
| VMR_0803 | prv-miR-8-5p | 2 | ......._ | 8 | 87 |
| VMR_0799 | prv-miR-8-5p | 2 | ......._ | 8 | 87 |
| VMR_0797 | prv-miR-8-5p | 2 | ......._ | 8 | 87 |
| VMR_0438 | mcmv-miR-m23-2 | 2 | ......._ | 8 | 87 |
| VMR_0399 | kshv-miR-k12-12 | 1 | ......a. | 8 | 87 |
| VMR_0997 | rlcv-miR-rl1-22-5p | 3 | ......__ | 8 | 75 |
| VMR_0995 | rlcv-miR-rl1-22-5p | 3 | ......__ | 8 | 75 |
| VMR_0897 | rcmv-miR-r111.1-3 | 3 | _......_ | 8 | 75 |
| VMR_0896 | rcmv-miR-r111.1-3 | 3 | _......_ | 8 | 75 |
| VMR_0821 | prv-miR-8-5p | 1 | __...... | 6 | 75 |
| VMR_0800 | prv-miR-8-5p | 1 | __...... | 6 | 75 |
| VMR_0465 | mdv1-miR-m3* | 1 | ......__ | 6 | 75 |
| VMR_0336 | hsv2-miR-h5 | 3 | _......_ | 8 | 75 |
| VMR_0318 | hsv1-miR-h8* | 6 | _......_ | 1 | 75 |
| VMR_0189 | hbv-miR-b4 | 3 | __...... | 8 | 75 |
