| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggggggt | 8 | ||
| VMR_0465 | mdv1-miR-m3* | 1 | ........ | 8 | 100 |
| VMR_0780 | prv-miR-7-5p | 2 | _....... | 8 | 87 |
| VMR_0776 | prv-miR-7-5p | 2 | _....... | 8 | 87 |
| VMR_0772 | prv-miR-7-5p | 2 | _....... | 8 | 87 |
| VMR_0768 | prv-miR-7-5p | 2 | _....... | 8 | 87 |
| VMR_0311 | hsv1-miR-h5-5p | 2 | _....... | 8 | 87 |
| VMR_0311 | hsv1-miR-h5-5p | 1 | _......_ | 6 | 75 |
| VMR_0036 | bhv5-miR-b14 | 2 | _....... | 8 | 87 |
| VMR_0766 | prv-miR-7-5p | 1 | .c...... | 8 | 87 |
| VMR_0997 | rlcv-miR-rl1-22-5p | 3 | ......__ | 8 | 75 |
| VMR_0995 | rlcv-miR-rl1-22-5p | 3 | ......__ | 8 | 75 |
| VMR_0819 | prv-miR-8-5p | 1 | ......__ | 6 | 75 |
| VMR_0818 | prv-miR-8-5p | 2 | ......__ | 7 | 75 |
| VMR_0817 | prv-miR-8-5p | 1 | ......__ | 6 | 75 |
| VMR_0816 | prv-miR-8-5p | 2 | ......__ | 7 | 75 |
| VMR_0813 | prv-miR-8-5p | 1 | ......__ | 6 | 75 |
| VMR_0812 | prv-miR-8-5p | 2 | ......__ | 7 | 75 |
| VMR_0810 | prv-miR-8-5p | 1 | ......__ | 6 | 75 |
| VMR_0809 | prv-miR-8-5p | 2 | ......__ | 7 | 75 |
| VMR_0804 | prv-miR-8-5p | 1 | ......__ | 6 | 75 |
| VMR_0803 | prv-miR-8-5p | 2 | ......__ | 7 | 75 |
| VMR_0799 | prv-miR-8-5p | 2 | ......__ | 7 | 75 |
| VMR_0797 | prv-miR-8-5p | 2 | ......__ | 7 | 75 |
| VMR_0795 | prv-miR-8-5p | 1 | ......__ | 6 | 75 |
| VMR_0779 | prv-miR-7-5p | 3 | _......_ | 8 | 75 |
| VMR_0774 | prv-miR-7-5p | 3 | _......_ | 8 | 75 |
| VMR_0771 | prv-miR-7-5p | 3 | _......_ | 8 | 75 |
| VMR_0767 | prv-miR-7-5p | 3 | _......_ | 8 | 75 |
| VMR_0764 | prv-miR-7-5p | 3 | _......_ | 8 | 75 |
| VMR_0438 | mcmv-miR-m23-2 | 2 | ......__ | 7 | 75 |
| VMR_0399 | kshv-miR-k12-12 | 1 | ......__ | 6 | 75 |
| VMR_0336 | hsv2-miR-h5 | 1 | _......_ | 6 | 75 |
| VMR_0336 | hsv2-miR-h5 | 2 | _......_ | 7 | 75 |
| VMR_0033 | bhv5-miR-B11 | 3 | __...... | 8 | 75 |
