| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggtgttg | 8 | ||
| VMR_0396 | kshv-miR-k12-10b | 1 | ........ | 8 | 100 |
| VMR_1273 | wssv-miR129 | 2 | ......._ | 8 | 87 |
| VMR_0391 | kshv-miR-k10b_+1_5 | 2 | ......._ | 8 | 87 |
| VMR_1167 | sgiv-miR-12 | 8 | ......a. | 1 | 87 |
| VMR_0394 | kshv-miR-k12-10a | 1 | .a...... | 8 | 87 |
| VMR_1216 | tumv-miR-s36 | 1 | _......_ | 6 | 75 |
| VMR_1096 | rrv-miR-rr1-15-3p | 3 | __...... | 8 | 75 |
| VMR_1095 | rrv-miR-rr1-15-3p | 3 | __...... | 8 | 75 |
| VMR_0782 | prv-miR-8-3p | 1 | _......_ | 6 | 75 |
| VMR_0532 | mghv-miR-m1-12 | 3 | ......__ | 8 | 75 |
| VMR_0522 | mdv2-miR-m30 | 6 | __...... | 1 | 75 |
