| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgtaaccc | 8 | ||
| VMR_0530 | mghv-miR-m1-11-3p | 1 | ........ | 8 | 100 |
| VMR_1083 | rrv-miR-rr1-13-3p | 3 | _......_ | 8 | 75 |
| VMR_1082 | rrv-miR-rr1-13-3p | 3 | _......_ | 8 | 75 |
| VMR_1081 | rrv-miR-rr1-13-3p | 3 | _......_ | 8 | 75 |
| VMR_1080 | rrv-miR-rr1-13-3p | 3 | _......_ | 8 | 75 |
| VMR_1049 | rlcv-miR-rl1-35-3p | 1 | ......__ | 6 | 75 |
| VMR_1047 | rlcv-miR-rl1-35-3p | 1 | ......__ | 6 | 75 |
| VMR_1046 | rlcv-miR-rl1-35-3p | 1 | ......__ | 6 | 75 |
| VMR_1044 | rlcv-miR-rl1-35-3p | 1 | ......__ | 6 | 75 |
| VMR_1043 | rlcv-miR-rl1-35-3p | 1 | ......__ | 6 | 75 |
| VMR_1042 | rlcv-miR-rl1-35-3p | 1 | ......__ | 6 | 75 |
| VMR_0372 | hvt-miR-h5* | 2 | _......_ | 7 | 75 |
| VMR_0102 | ebv-miR-bart13 | 1 | ......__ | 6 | 75 |
