| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgtgtatc | 8 | ||
| VMR_0474 | mdv1-miR-m5-3p | 1 | ........ | 8 | 100 |
| VMR_0472 | mdv1-miR-m5 | 1 | ........ | 8 | 100 |
| VMR_0567 | ohv2-miR-17-23 | 7 | ......._ | 1 | 87 |
| VMR_0581 | ohv2-miR-3 | 1 | .c...... | 8 | 87 |
| VMR_0263 | hpv16-miR-h2 | 2 | ......__ | 7 | 75 |
| VMR_0262 | hpv16-miR-h1 | 2 | _......_ | 7 | 75 |
