| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgtttcag | 8 | ||
| VMR_0234 | hcmv-miR-us22-5p6 | 1 | ........ | 8 | 100 |
| VMR_0974 | rlcv-miR-rl1-16-3p | 8 | _......_ | 3 | 75 |
| VMR_0895 | rcmv-miR-r111.1-2 | 8 | ......__ | 3 | 75 |
| VMR_0894 | rcmv-miR-r111.1-2 | 8 | ......__ | 3 | 75 |
| VMR_0893 | rcmv-miR-r111.1-2 | 8 | ......__ | 3 | 75 |
| VMR_0547 | mghv-miR-m1-6 | 6 | _......_ | 1 | 75 |
