| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttacagca | 8 | ||
| VMR_0348 | hvsa-miR-hsur5-3p | 1 | ........ | 8 | 100 |
| VMR_0392 | kshv-miR-k12-1 | 2 | ......__ | 7 | 75 |
| VMR_0252 | hhv6b-miR-ro6-2 | 1 | ......__ | 6 | 75 |
