| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttagccc | 7 | ||
| VMR_0979 | rlcv-miR-rl1-18-3p | 1 | ....... | 7 | 100 |
| VMR_1039 | rlcv-miR-rl1-34-3p | 1 | ....... | 7 | 100 |
| VMR_1038 | rlcv-miR-rl1-34-3p | 1 | ....... | 7 | 100 |
| VMR_1037 | rlcv-miR-rl1-34-3p | 1 | ....... | 7 | 100 |
| VMR_1036 | rlcv-miR-rl1-34-3p | 2 | ....... | 8 | 100 |
