| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttatgat | 7 | ||
| VMR_0947 | rhcmv-miR-rh183-1 | 2 | ....... | 8 | 100 |
| VMR_0247 | hcmv-miR-us5-2 | 1 | ....... | 7 | 100 |
| VMR_0963 | rlcv-miR-rl1-13-3p | 7 | _...... | 2 | 85 |
| VMR_0135 | ebv-miR-bart7 | 7 | _...... | 2 | 85 |
