| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttccacc | 7 | ||
| VMR_1258 | tumv-miR-s74 | 2 | ....... | 8 | 100 |
| VMR_0314 | hsv1-miR-h6-5p | 7 | ....... | 1 | 100 |
| VMR_1256 | tumv-miR-s72 | 7 | ......_ | 2 | 85 |
| VMR_0909 | rcmv-miR-r111.2-5 | 1 | ......_ | 6 | 85 |
| VMR_0058 | bmnpv-miR-4 | 6 | _...... | 1 | 85 |
