| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttcccacc | 8 | ||
| VMR_0341 | hsv2-miR-h9-3p | 1 | ........ | 8 | 100 |
| VMR_0972 | rlcv-miR-rl1-15-5p | 2 | __...... | 7 | 75 |
| VMR_0971 | rlcv-miR-rl1-15-5p | 2 | __...... | 7 | 75 |
| VMR_1063 | rlcv-miR-rl1-8-3p | 6 | __...... | 1 | 75 |
| VMR_1062 | rlcv-miR-rl1-8-3p | 6 | __...... | 1 | 75 |
| VMR_0808 | prv-miR-8-5p | 7 | __...... | 2 | 75 |
| VMR_0535 | mghv-miR-m1-13-5p | 6 | ......__ | 1 | 75 |
| VMR_0158 | hbv-miR-b19-5p | 6 | __...... | 1 | 75 |
| VMR_0070 | dev-miR-d1-5p | 7 | ......__ | 2 | 75 |
