| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttctgac | 7 | ||
| VMR_0430 | mcmv-miR-m108-1 | 2 | ....... | 8 | 100 |
| VMR_0389 | jcv-miR-j1-5p | 1 | ......_ | 6 | 85 |
| VMR_0310 | hsv1-miR-h5-3p | 6 | _...... | 1 | 85 |
| VMR_0088 | dev-miR-d6-3p | 6 | _...... | 1 | 85 |
