| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttctgaga | 8 | ||
| VMR_0389 | jcv-miR-j1-5p | 1 | ........ | 8 | 100 |
| VMR_0039 | bkv-miR-b1-5p | 2 | _....... | 8 | 87 |
| VMR_0430 | mcmv-miR-m108-1 | 2 | ......__ | 7 | 75 |
| VMR_0364 | hvt-miR-h18-3p | 1 | __...... | 6 | 75 |
| VMR_0325 | hsv2-miR-h2 | 1 | _......_ | 6 | 75 |
| VMR_0277 | hsv1-miR-132792 | 3 | _......_ | 8 | 75 |
