| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttgaagaa | 8 | ||
| VMR_1213 | tumv-miR-s33 | 1 | ........ | 8 | 100 |
| VMR_0383 | iltv-miR-i5 | 1 | _....... | 7 | 87 |
| VMR_0930 | rcmv-miR-r87-1 | 1 | .c...... | 8 | 87 |
| VMR_0929 | rcmv-miR-r87-1 | 1 | .c...... | 8 | 87 |
| VMR_0450 | mcv-miR-m1-5p | 1 | .g...... | 8 | 87 |
| VMR_1290 | wssv-miR214 | 3 | __...... | 8 | 75 |
| VMR_1289 | wssv-miR212 | 8 | __...... | 3 | 75 |
| VMR_1280 | wssv-miR162 | 3 | __...... | 8 | 75 |
| VMR_1276 | wssv-miR154-3p | 7 | _......_ | 2 | 75 |
| VMR_0931 | rcmv-miR-r87-1 | 1 | __...... | 6 | 75 |
| VMR_0521 | mdv2-miR-m29-5p | 6 | _......_ | 1 | 75 |
| VMR_0217 | hbv-miR-b8-5p | 6 | _......_ | 1 | 75 |
| VMR_0216 | hbv-miR-b8-5p | 8 | _......_ | 3 | 75 |
| VMR_0214 | hbv-miR-b8-5p | 6 | _......_ | 1 | 75 |
| VMR_0213 | hbv-miR-b8-5p | 7 | _......_ | 2 | 75 |
| VMR_0212 | hbv-miR-b8-5p | 8 | _......_ | 3 | 75 |
| VMR_0210 | hbv-miR-b8-5p | 7 | _......_ | 2 | 75 |
| VMR_0209 | hbv-miR-b8-5p | 8 | _......_ | 3 | 75 |
| VMR_0203 | hbv-miR-b8-5p | 8 | _......_ | 3 | 75 |
| VMR_0201 | hbv-miR-b8-3p | 8 | _......_ | 3 | 75 |
