| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttgattgt | 8 | ||
| VMR_0991 | rlcv-miR-rl1-21-5p | 1 | ........ | 8 | 100 |
| VMR_0992 | rlcv-miR-rl1-21-5p | 1 | ........ | 8 | 100 |
| VMR_1301 | wssv-miR72 | 7 | ......__ | 2 | 75 |
| VMR_1227 | tumv-miR-s46 | 6 | ......__ | 1 | 75 |
| VMR_1224 | tumv-miR-s43 | 6 | ......__ | 1 | 75 |
| VMR_0242 | hcmv-miR-us33-5p | 1 | __...... | 6 | 75 |
