| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttgggag | 7 | ||
| VMR_0333 | hsv2-miR-h3 | 2 | ....... | 8 | 100 |
| VMR_1230 | tumv-miR-s49 | 3 | ......_ | 8 | 85 |
| VMR_0647 | prv-miR-11-1 | 2 | _...... | 7 | 85 |
| VMR_0643 | prv-miR-11-1 | 3 | _...... | 8 | 85 |
| VMR_0638 | prv-miR-11-1 | 3 | _...... | 8 | 85 |
| VMR_0631 | prv-miR-11-1 | 2 | _...... | 7 | 85 |
| VMR_0630 | prv-miR-11-1 | 3 | _...... | 8 | 85 |
| VMR_0622 | prv-miR-11-1 | 2 | _...... | 7 | 85 |
| VMR_0614 | prv-miR-11-1 | 3 | _...... | 8 | 85 |
| VMR_0293 | hsv1-miR-h12 | 1 | ......_ | 6 | 85 |
| VMR_0070 | dev-miR-d1-5p | 1 | ......_ | 6 | 85 |
