| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttggtgt | 7 | ||
| VMR_0532 | mghv-miR-m1-12 | 2 | ....... | 8 | 100 |
| VMR_0391 | kshv-miR-k10b_+1_5 | 1 | ....... | 7 | 100 |
| VMR_1274 | wssv-miR143 | 7 | ......_ | 2 | 85 |
| VMR_1273 | wssv-miR129 | 2 | _...... | 7 | 85 |
| VMR_1268 | tumv-miR-s9 | 2 | ......_ | 7 | 85 |
| VMR_1249 | tumv-miR-s66 | 2 | ......_ | 7 | 85 |
| VMR_1167 | sgiv-miR-12 | 8 | _...... | 3 | 85 |
| VMR_0396 | kshv-miR-k12-10b | 1 | _...... | 6 | 85 |
