| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tttggatt | 8 | ||
| VMR_0339 | hsv2-miR-h7-3p | 1 | ........ | 8 | 100 |
| VMR_0316 | hsv1-miR-h7* | 1 | ......._ | 7 | 87 |
| VMR_1188 | tumv-miR-s10 | 6 | ......__ | 1 | 75 |
