| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tttgggag | 8 | ||
| VMR_0333 | hsv2-miR-h3 | 1 | ........ | 8 | 100 |
| VMR_1230 | tumv-miR-s49 | 2 | ......._ | 8 | 87 |
| VMR_0573 | ohv2-miR-17-30 | 1 | ......t. | 8 | 87 |
| VMR_0647 | prv-miR-11-1 | 2 | __...... | 7 | 75 |
| VMR_0643 | prv-miR-11-1 | 3 | __...... | 8 | 75 |
| VMR_0638 | prv-miR-11-1 | 3 | __...... | 8 | 75 |
| VMR_0631 | prv-miR-11-1 | 2 | __...... | 7 | 75 |
| VMR_0630 | prv-miR-11-1 | 3 | __...... | 8 | 75 |
| VMR_0622 | prv-miR-11-1 | 2 | __...... | 7 | 75 |
| VMR_0614 | prv-miR-11-1 | 3 | __...... | 8 | 75 |
| VMR_0293 | hsv1-miR-h12 | 1 | _......_ | 6 | 75 |
| VMR_0070 | dev-miR-d1-5p | 1 | _......_ | 6 | 75 |
