| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttttccc | 7 | ||
| VMR_0509 | mdv2-miR-m24* | 2 | ....... | 8 | 100 |
| VMR_1271 | wssv-miR123 | 3 | ......_ | 8 | 85 |
| VMR_1251 | tumv-miR-s68 | 3 | ......_ | 8 | 85 |
| VMR_0456 | mdv1-miR-m11-5p | 1 | ......_ | 6 | 85 |
| VMR_0374 | hvt-miR-h7-5p | 2 | ......_ | 7 | 85 |
