BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d18-3p
         (8 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_0231 | hcmv-miR-ul70-3p | Human cytomegalovirus                    16   0.25 
VMR_0074 | dev-miR-d18-3p | Duck enteritis virus                       16   0.25 
VMR_0777 | prv-miR-7-5p | Pseudorabies virus                           14   0.99 
VMR_0773 | prv-miR-7-5p | Pseudorabies virus                           14   0.99 
VMR_0769 | prv-miR-7-5p | Pseudorabies virus                           14   0.99 
VMR_0738 | prv-miR-5-5p | Pseudorabies virus                           14   0.99 
VMR_0727 | prv-miR-5-5p | Pseudorabies virus                           14   0.99 
VMR_0723 | prv-miR-5-5p | Pseudorabies virus                           14   0.99 
VMR_0737 | prv-miR-5-5p | Pseudorabies virus                           12   3.9  
VMR_0736 | prv-miR-5-5p | Pseudorabies virus                           12   3.9  
VMR_0718 | prv-miR-5-5p | Pseudorabies virus                           12   3.9  
VMR_0684 | prv-miR-2-5p | Pseudorabies virus                           12   3.9  
VMR_0682 | prv-miR-2-5p | Pseudorabies virus                           12   3.9  
VMR_0679 | prv-miR-2-5p | Pseudorabies virus                           12   3.9  
VMR_0677 | prv-miR-2-5p | Pseudorabies virus                           12   3.9  
VMR_0674 | prv-miR-2-5p | Pseudorabies virus                           12   3.9  
VMR_0673 | prv-miR-2-5p | Pseudorabies virus                           12   3.9  
VMR_0670 | prv-miR-2-5p | Pseudorabies virus                           12   3.9  
VMR_0352 | hvt-miR-h11 | Herpesvirus of turkeys                        12   3.9  
VMR_0046 | blv-miR-b3-5p | Bovine leukemia virus                       12   3.9  
>VMR_0231 | hcmv-miR-ul70-3p | Human cytomegalovirus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 ccatcccc 8
         ||||||||
Sbjct: 8 ccatcccc 1
>VMR_0074 | dev-miR-d18-3p | Duck enteritis virus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ccatcccc 8
         ||||||||
Sbjct: 1 ccatcccc 8
>VMR_0777 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccatccc 7
         |||||||
Sbjct: 7 ccatccc 1
>VMR_0773 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccatccc 7
         |||||||
Sbjct: 7 ccatccc 1
>VMR_0769 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ccatccc 7
         |||||||
Sbjct: 7 ccatccc 1
>VMR_0738 | prv-miR-5-5p | Pseudorabies virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 catcccc 8
         |||||||
Sbjct: 8 catcccc 2
>VMR_0727 | prv-miR-5-5p | Pseudorabies virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 catcccc 8
         |||||||
Sbjct: 8 catcccc 2
>VMR_0723 | prv-miR-5-5p | Pseudorabies virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 catcccc 8
         |||||||
Sbjct: 8 catcccc 2
>VMR_0737 | prv-miR-5-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccatcc 6
         ||||||
Sbjct: 6 ccatcc 1
>VMR_0736 | prv-miR-5-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccatcc 6
         ||||||
Sbjct: 8 ccatcc 3
>VMR_0718 | prv-miR-5-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 catccc 7
         ||||||
Sbjct: 6 catccc 1
>VMR_0684 | prv-miR-2-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 catccc 7
         ||||||
Sbjct: 3 catccc 8
>VMR_0682 | prv-miR-2-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 catccc 7
         ||||||
Sbjct: 3 catccc 8
>VMR_0679 | prv-miR-2-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 catccc 7
         ||||||
Sbjct: 3 catccc 8
>VMR_0677 | prv-miR-2-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 catccc 7
         ||||||
Sbjct: 3 catccc 8
>VMR_0674 | prv-miR-2-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 catccc 7
         ||||||
Sbjct: 3 catccc 8
>VMR_0673 | prv-miR-2-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 catccc 7
         ||||||
Sbjct: 3 catccc 8
>VMR_0670 | prv-miR-2-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 catccc 7
         ||||||
Sbjct: 3 catccc 8
>VMR_0352 | hvt-miR-h11 | Herpesvirus of turkeys
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 catccc 7
         ||||||
Sbjct: 6 catccc 1
>VMR_0046 | blv-miR-b3-5p | Bovine leukemia virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 atcccc 8
         ||||||
Sbjct: 1 atcccc 6
  Database: /home/users/abid/BLAST/VIRMIRNA
    Posted date:  Sep 8, 2014  7:41 PM
  Number of letters in database: 10,464
  Number of sequences in database:  1308
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 34
Number of extensions: 24
Number of successful extensions: 20
Number of sequences better than 100.0: 20
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space:    20928
Effective search space used:    20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)