VIRmiRNA

BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv2-miR-m21*
         (7 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_0512 | mdv2-miR-m25-5p | Mareks disease virus type 2               14   0.74 
VMR_0503 | mdv2-miR-m21* | Mareks disease virus type 2                 14   0.74 
VMR_0298 | hsv1-miR-h16 | Herpes simplex virus 1                       12   2.9  
VMR_0152 | hbv-miR-b14rc-3p | Herpes B virus                           12   2.9  
VMR_0150 | hbv-miR-b14rc-3p | Herpes B virus                           12   2.9  
VMR_0149 | hbv-miR-b14rc-3p | Herpes B virus                           12   2.9  
VMR_0122 | ebv-miR-bart2-3p | Epstein Barr virus                       12   2.9  
VMR_0054 | blv-miR-b5-5p | Bovine leukemia virus                       12   2.9  

>VMR_0512 | mdv2-miR-m25-5p | Mareks disease virus type 2
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcctt 7
         |||||||
Sbjct: 1 cctcctt 7



>VMR_0503 | mdv2-miR-m21* | Mareks disease virus type 2
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 cctcctt 7
         |||||||
Sbjct: 2 cctcctt 8



>VMR_0298 | hsv1-miR-h16 | Herpes simplex virus 1
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctcct 6
         ||||||
Sbjct: 8 cctcct 3



>VMR_0152 | hbv-miR-b14rc-3p | Herpes B virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctcct 6
         ||||||
Sbjct: 6 cctcct 1



>VMR_0150 | hbv-miR-b14rc-3p | Herpes B virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctcct 6
         ||||||
Sbjct: 6 cctcct 1



>VMR_0149 | hbv-miR-b14rc-3p | Herpes B virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctcct 6
         ||||||
Sbjct: 6 cctcct 1



>VMR_0122 | ebv-miR-bart2-3p | Epstein Barr virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ctcctt 7
         ||||||
Sbjct: 6 ctcctt 1



>VMR_0054 | blv-miR-b5-5p | Bovine leukemia virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 cctcct 6
         ||||||
Sbjct: 6 cctcct 1



  Database: /home/users/abid/BLAST/VIRMIRNA
    Posted date:  Sep 8, 2014  7:41 PM
  Number of letters in database: 10,464
  Number of sequences in database:  1308
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 11
Number of extensions: 9
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 7
Length of database: 10,464
Length adjustment: 4
Effective length of query: 3
Effective length of database: 5232
Effective search space:    15696
Effective search space used:    15696
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)