VIRmiRNA

BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d12-3p
         (8 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_0064 | dev-miR-d12-3p | Duck enteritis virus                       16   0.25 
VMR_0594 | prv-miR-10-1 | Pseudorabies virus                           14   0.99 
VMR_1135 | rrv-miR-rr1-6-5p | Rhesus rhadinovirus                      12   3.9  
VMR_1134 | rrv-miR-rr1-6-5p | Rhesus rhadinovirus                      12   3.9  
VMR_1129 | rrv-miR-rr1-6 | Rhesus rhadinovirus                         12   3.9  
VMR_0913 | rcmv-miR-r111.2-6 | Rat cytomegalovirus                     12   3.9  
VMR_0912 | rcmv-miR-r111.2-6 | Rat cytomegalovirus                     12   3.9  
VMR_0911 | rcmv-miR-r111.2-6 | Rat cytomegalovirus                     12   3.9  
VMR_0349 | hvsa-miR-hsur5-5p | Herpesvirus saimiri strain A11          12   3.9  

>VMR_0064 | dev-miR-d12-3p | Duck enteritis virus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ctccgcgg 8
         ||||||||
Sbjct: 1 ctccgcgg 8




 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 3 ccgcgg 8
         ||||||
Sbjct: 8 ccgcgg 3



>VMR_0594 | prv-miR-10-1 | Pseudorabies virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tccgcgg 8
         |||||||
Sbjct: 1 tccgcgg 7




 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tccgcgg 8
         |||||||
Sbjct: 8 tccgcgg 2



>VMR_1135 | rrv-miR-rr1-6-5p | Rhesus rhadinovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tccgcg 7
         ||||||
Sbjct: 6 tccgcg 1



>VMR_1134 | rrv-miR-rr1-6-5p | Rhesus rhadinovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tccgcg 7
         ||||||
Sbjct: 6 tccgcg 1



>VMR_1129 | rrv-miR-rr1-6 | Rhesus rhadinovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tccgcg 7
         ||||||
Sbjct: 6 tccgcg 1



>VMR_0913 | rcmv-miR-r111.2-6 | Rat cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tccgcg 7
         ||||||
Sbjct: 8 tccgcg 3



>VMR_0912 | rcmv-miR-r111.2-6 | Rat cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tccgcg 7
         ||||||
Sbjct: 8 tccgcg 3



>VMR_0911 | rcmv-miR-r111.2-6 | Rat cytomegalovirus