BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0624 | prv-miR-11-1 | Pseudorabies virus 16 0.25
VMR_0639 | prv-miR-11-1 | Pseudorabies virus 14 0.99
VMR_0633 | prv-miR-11-1 | Pseudorabies virus 14 0.99
VMR_0632 | prv-miR-11-1 | Pseudorabies virus 14 0.99
VMR_0623 | prv-miR-11-1 | Pseudorabies virus 14 0.99
VMR_0937 | rcmv-miR-r95.1-1 | Rat cytomegalovirus 12 3.9
VMR_0927 | rcmv-miR-r6-1 | Rat cytomegalovirus 12 3.9
VMR_0650 | prv-miR-11-1 | Pseudorabies virus 12 3.9
VMR_0648 | prv-miR-11-1 | Pseudorabies virus 12 3.9
VMR_0615 | prv-miR-11-1 | Pseudorabies virus 12 3.9
VMR_0255 | hhv6b-miR-ro6-3-5p | Human herpesvirus 6B 12 3.9
>VMR_0624 | prv-miR-11-1 | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ggacggaa 8
||||||||
Sbjct: 1 ggacggaa 8
>VMR_0639 | prv-miR-11-1 | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggacgga 7
|||||||
Sbjct: 2 ggacgga 8
>VMR_0633 | prv-miR-11-1 | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gacggaa 8
|||||||
Sbjct: 1 gacggaa 7
>VMR_0632 | prv-miR-11-1 | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggacgga 7
|||||||
Sbjct: 2 ggacgga 8
>VMR_0623 | prv-miR-11-1 | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggacgga 7
|||||||
Sbjct: 2 ggacgga 8
>VMR_0937 | rcmv-miR-r95.1-1 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacgga 7
||||||
Sbjct: 1 gacgga 6
>VMR_0927 | rcmv-miR-r6-1 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggacgg 6
||||||
Sbjct: 8 ggacgg 3
>VMR_0650 | prv-miR-11-1 | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacgga 7
||||||
Sbjct: 3 gacgga 8
>VMR_0648 | prv-miR-11-1 | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 acggaa 8
||||||
Sbjct: 1 acggaa 6
>VMR_0615 | prv-miR-11-1 | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacgg 6
||||||
Sbjct: 3 ggacgg 8
>VMR_0255 | hhv6b-miR-ro6-3-5p | Human herpesvirus 6B
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacgga 7
||||||
Sbjct: 1 gacgga 6
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 18
Number of extensions: 12
Number of successful extensions: 11
Number of sequences better than 100.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)