BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m21*
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0503 | mdv2-miR-m21* | Mareks disease virus type 2 16 0.25
VMR_1277 | wssv-miR154-5p | White Spot Syndrome virus 14 0.99
VMR_0512 | mdv2-miR-m25-5p | Mareks disease virus type 2 14 0.99
VMR_0298 | hsv1-miR-h16 | Herpes simplex virus 1 12 3.9
VMR_0152 | hbv-miR-b14rc-3p | Herpes B virus 12 3.9
VMR_0150 | hbv-miR-b14rc-3p | Herpes B virus 12 3.9
VMR_0149 | hbv-miR-b14rc-3p | Herpes B virus 12 3.9
VMR_0122 | ebv-miR-bart2-3p | Epstein Barr virus 12 3.9
VMR_0054 | blv-miR-b5-5p | Bovine leukemia virus 12 3.9
>VMR_0503 | mdv2-miR-m21* | Mareks disease virus type 2
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcctcctt 8
||||||||
Sbjct: 1 tcctcctt 8
>VMR_1277 | wssv-miR154-5p | White Spot Syndrome virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 8 tcctcct 2
>VMR_0512 | mdv2-miR-m25-5p | Mareks disease virus type 2
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctcctt 8
|||||||
Sbjct: 1 cctcctt 7
>VMR_0298 | hsv1-miR-h16 | Herpes simplex virus 1
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctcct 7
||||||
Sbjct: 8 cctcct 3
>VMR_0152 | hbv-miR-b14rc-3p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctcct 7
||||||
Sbjct: 6 cctcct 1
>VMR_0150 | hbv-miR-b14rc-3p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctcct 7
||||||
Sbjct: 6 cctcct 1
>VMR_0149 | hbv-miR-b14rc-3p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctcct 7
||||||
Sbjct: 6 cctcct 1
>VMR_0122 | ebv-miR-bart2-3p | Epstein Barr virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 ctcctt 8
||||||
Sbjct: 6 ctcctt 1
>VMR_0054 | blv-miR-b5-5p | Bovine leukemia virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctcct 7
||||||
Sbjct: 6 cctcct 1
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 13
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)
