| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaaaggca | 8 | ||
| MIMAT0019079 | hsa-miR-548an | 1 | ........ | 8 | 100 |
| MIMAT0011252 | sme-miR-2159-5p | 8 | ........ | 1 | 100 |
| MIMAT0034308 | cfa-miR-8818 | 7 | _....... | 1 | 87 |
| MIMAT0033860 | atr-miR8577 | 1 | ......._ | 7 | 87 |
| MIMAT0028090 | mmu-miR-7092-5p | 1 | _....... | 7 | 87 |
| MIMAT0024383 | ppy-miR-4484 | 2 | ......._ | 8 | 87 |
| MIMAT0019018 | hsa-miR-4484 | 1 | ......._ | 7 | 87 |
| MIMAT0018184 | hsa-miR-3910 | 1 | _....... | 7 | 87 |
| MIMAT0026471 | cin-miR-4000a-2-3p | 7 | ......._ | 1 | 87 |
| MIMAT0016431 | cin-miR-4000a-3p | 7 | ......._ | 1 | 87 |
| MIMAT0006796 | oan-miR-1327-5p | 2 | ......._ | 8 | 87 |
| MIMAT0004940 | mmu-miR-511-5p | 8 | _....... | 2 | 87 |
| MIMAT0034491 | eca-miR-8957 | 8 | .g...... | 1 | 87 |
| MIMAT0032837 | cel-miR-8210-5p | 8 | .g...... | 1 | 87 |
| MIMAT0027792 | mmu-miR-6946-5p | 1 | ......g. | 8 | 87 |
| MIMAT0018656 | tca-miR-3816-5p | 1 | .c...... | 8 | 87 |
| MIMAT0015403 | bmo-miR-3223-5p | 8 | ......t. | 1 | 87 |
| MIMAT0014463 | tgu-miR-2963-3p | 1 | ......g. | 8 | 87 |
| MIMAT0005169 | ppt-miR1052 | 8 | ......a. | 1 | 87 |
| MIMAT0026621 | hsa-miR-605-3p | 1 | .g...... | 8 | 87 |
| MIMAT0036671 | oha-miR-124-4-3p | 2 | __...... | 7 | 75 |
| MIMAT0036670 | oha-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0036668 | oha-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0036591 | tch-miR-532-5p | 8 | __...... | 3 | 75 |
| MIMAT0036460 | mmu-miR-9768-3p | 8 | __...... | 3 | 75 |
| MIMAT0036270 | chi-miR-532-5p | 8 | __...... | 3 | 75 |
| MIMAT0036246 | chi-miR-487a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0035922 | chi-miR-124a | 2 | __...... | 7 | 75 |
| MIMAT0035587 | dvi-miR-968-3p | 7 | ......__ | 2 | 75 |
| MIMAT0035293 | gsa-miR-124b-3p | 2 | __...... | 7 | 75 |
| MIMAT0035281 | gsa-miR-2001-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035275 | gsa-miR-124a-3p | 2 | __...... | 7 | 75 |
| MIMAT0035153 | efu-miR-532 | 8 | __...... | 3 | 75 |
| MIMAT0035131 | efu-miR-124 | 3 | __...... | 8 | 75 |
| MIMAT0033481 | str-miR-8395-3p | 2 | __...... | 7 | 75 |
| MIMAT0033439 | str-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0033361 | str-miR-8370-3p | 2 | __...... | 7 | 75 |
| MIMAT0032963 | ppc-miR-8249-3p | 2 | __...... | 7 | 75 |
| MIMAT0032329 | ssa-miR-130d-2-5p | 8 | ......__ | 3 | 75 |
| MIMAT0031582 | bbe-miR-129a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031578 | bbe-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0031426 | mmu-miR-8120 | 8 | __...... | 3 | 75 |
| MIMAT0031414 | mmu-miR-1668 | 2 | _......_ | 7 | 75 |
| MIMAT0030787 | prd-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0030471 | prd-miR-84-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032204 | lva-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0032157 | pmi-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0029752 | cbn-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0029644 | crm-miR-124b | 2 | __...... | 7 | 75 |
| MIMAT0029608 | cbr-miR-124c | 2 | __...... | 7 | 75 |
| MIMAT0029607 | cbr-miR-124b | 2 | __...... | 7 | 75 |
| MIMAT0029404 | ipu-miR-130c | 8 | ......__ | 3 | 75 |
| MIMAT0029396 | ipu-miR-124a | 2 | __...... | 7 | 75 |
| MIMAT0031130 | sly-miR168a-3p | 8 | __...... | 3 | 75 |
| MIMAT0028755 | mdo-miR-1544d-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028745 | mdo-miR-1544b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028741 | mdo-miR-7364-3p | 8 | __...... | 3 | 75 |
| MIMAT0028714 | mdo-miR-7351-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028629 | mdo-miR-7314-3p | 1 | __...... | 6 | 75 |
| MIMAT0031110 | mdo-miR-130c-2-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028514 | mdo-miR-130c-1-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028482 | mdo-miR-7258-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028183 | dev-miR-D11-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026405 | sbi-miR6220-3p | 7 | __...... | 2 | 75 |
| MIMAT0027719 | mmu-miR-6909-3p | 6 | __...... | 1 | 75 |
| MIMAT0027565 | hsa-miR-6832-3p | 8 | ......__ | 3 | 75 |
| MIMAT0027437 | hsa-miR-6768-3p | 2 | _......_ | 7 | 75 |
| MIMAT0025585 | mmu-miR-6540-5p | 3 | __...... | 8 | 75 |
| MIMAT0025431 | pol-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0025155 | mmu-miR-6403 | 3 | _......_ | 8 | 75 |
| MIMAT0025133 | mmu-miR-6386 | 8 | __...... | 3 | 75 |
| MIMAT0025082 | mmu-miR-6339 | 8 | __...... | 3 | 75 |
| MIMAT0025026 | sma-miR-124a-3p | 2 | __...... | 7 | 75 |
| MIMAT0024937 | hme-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0027313 | ppe-miR6283 | 2 | ......__ | 7 | 75 |
| MIMAT0027305 | ppe-miR6276 | 1 | _......_ | 6 | 75 |
| MIMAT0024501 | mse-miR-6093 | 7 | ......__ | 2 | 75 |
| MIMAT0024474 | mse-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0024307 | ggo-miR-4484 | 3 | ......__ | 8 | 75 |
| MIMAT0024213 | ggo-miR-940 | 1 | __...... | 6 | 75 |
| MIMAT0024131 | ggo-miR-532 | 8 | __...... | 3 | 75 |
| MIMAT0023981 | cgr-miR-532-5p | 8 | __...... | 3 | 75 |
| MIMAT0023740 | cgr-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0023338 | hco-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0022573 | ola-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0023089 | tur-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0022378 | mmu-miR-5624-3p | 3 | __...... | 8 | 75 |
| MIMAT0022353 | mmu-miR-3544-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021726 | aca-miR-124b | 2 | __...... | 7 | 75 |
| MIMAT0021725 | aca-miR-124a | 2 | __...... | 7 | 75 |
| MIMAT0021539 | asu-miR-5345b | 1 | __...... | 6 | 75 |
| MIMAT0021537 | asu-miR-5345a-5p | 1 | __...... | 6 | 75 |
| MIMAT0021496 | asu-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0020579 | osa-miR5080 | 1 | ......__ | 6 | 75 |
| MIMAT0021066 | gma-miR5039 | 7 | ......__ | 2 | 75 |
| MIMAT0020267 | emu-miR-124b | 2 | __...... | 7 | 75 |
| MIMAT0020266 | emu-miR-124a | 2 | __...... | 7 | 75 |
| MIMAT0020242 | egr-miR-124b-3p | 2 | __...... | 7 | 75 |
| MIMAT0020240 | egr-miR-124a | 2 | __...... | 7 | 75 |
| MIMAT0020120 | xbo-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0019454 | pma-miR-130a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0019445 | pma-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0018774 | tca-miR-3857-5p | 8 | __...... | 3 | 75 |
| MIMAT0018609 | ame-miR-3740 | 3 | ......__ | 8 | 75 |
| MIMAT0018165 | hsa-miR-3714 | 2 | __...... | 7 | 75 |
| MIMAT0018049 | vvi-miR3638-5p | 8 | __...... | 3 | 75 |
| MIMAT0016846 | hsa-miR-4297 | 6 | __...... | 1 | 75 |
| MIMAT0016621 | cin-miR-4066-3p | 8 | __...... | 3 | 75 |
| MIMAT0016263 | sja-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0015999 | ppy-miR-553 | 1 | ......__ | 6 | 75 |
| MIMAT0015987 | ppy-miR-532-5p | 8 | __...... | 3 | 75 |
| MIMAT0015929 | ppy-miR-506 | 2 | __...... | 7 | 75 |
| MIMAT0015747 | ppy-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0015688 | nvi-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0017720 | aly-miR3443-3p | 7 | __...... | 2 | 75 |
| MIMAT0014712 | api-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0027012 | tgu-miR-130c-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027006 | tgu-miR-130a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0014507 | tgu-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0014360 | cqu-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0014282 | aae-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0014116 | bma-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0013940 | ssc-miR-532-5p | 8 | __...... | 3 | 75 |
| MIMAT0013235 | eca-miR-532-5p | 8 | __...... | 3 | 75 |
| MIMAT0012906 | eca-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0012829 | rno-miR-511-5p | 8 | __...... | 3 | 75 |
| MIMAT0012685 | isc-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0012639 | dpu-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0012492 | dsi-miR-992-3p | 7 | ......__ | 2 | 75 |
| MIMAT0012303 | dps-miR-2516 | 6 | __...... | 1 | 75 |
| MIMAT0012246 | dps-miR-968-3p | 8 | ......__ | 3 | 75 |
| MIMAT0012210 | dme-miR-2498-5p | 2 | _......_ | 7 | 75 |
| MIMAT0011645 | ppc-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0011541 | crm-miR-124a | 2 | __...... | 7 | 75 |
| MIMAT0011239 | sme-miR-124e-3p | 2 | __...... | 7 | 75 |
| MIMAT0011238 | sme-miR-124d-3p | 2 | __...... | 7 | 75 |
| MIMAT0010008 | bfl-miR-129a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019168 | bfl-miR-2059-5p | 2 | __...... | 7 | 75 |
| MIMAT0009666 | spu-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0009625 | sko-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0009578 | lgi-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0009555 | cte-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0009482 | bfl-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0009458 | mmu-miR-1981-5p | 3 | _......_ | 8 | 75 |
| MIMAT0009446 | mmu-miR-1971 | 3 | _......_ | 8 | 75 |
| MIMAT0013774 | bta-miR-124b | 2 | __...... | 7 | 75 |
| MIMAT0009105 | dya-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0009027 | dwi-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0008939 | dvi-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0008847 | dsi-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0008839 | dse-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0008731 | dpe-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0008688 | dmo-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0008615 | dgr-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0008547 | der-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0008431 | dan-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0008370 | tca-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0008347 | ptr-miR-940 | 1 | __...... | 6 | 75 |
| MIMAT0006758 | cfa-miR-532 | 8 | __...... | 3 | 75 |
| MIMAT0006657 | cfa-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0006541 | mml-miR-940 | 1 | __...... | 6 | 75 |
| MIMAT0006422 | mml-miR-553 | 2 | ......__ | 7 | 75 |
| MIMAT0006403 | mml-miR-532-5p | 8 | __...... | 3 | 75 |
| MIMAT0007733 | gga-miR-130c-5p | 8 | ......__ | 3 | 75 |
| MIMAT0026768 | mdo-miR-1544a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0006126 | csa-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0006100 | cin-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0006083 | odi-miR-124b | 2 | __...... | 7 | 75 |
| MIMAT0006082 | odi-miR-124a | 2 | __...... | 7 | 75 |
| MIMAT0007158 | oan-miR-130b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0007114 | oan-miR-124a-1-3p | 2 | __...... | 7 | 75 |
| MIMAT0007002 | oan-miR-1360 | 1 | __...... | 6 | 75 |
| MIMAT0006907 | oan-miR-130c-5p | 8 | ......__ | 3 | 75 |
| MIMAT0005779 | pbi-miR-506 | 2 | __...... | 7 | 75 |
| MIMAT0005770 | ptr-miR-506 | 2 | __...... | 7 | 75 |
| MIMAT0005762 | mml-miR-506-3p | 2 | __...... | 7 | 75 |
| MIMAT0005752 | ssy-miR-506 | 2 | __...... | 7 | 75 |
| MIMAT0005322 | rno-miR-532-5p | 8 | __...... | 3 | 75 |
| MIMAT0020865 | dme-miR-968-3p | 7 | ......__ | 2 | 75 |
| MIMAT0004983 | hsa-miR-940 | 1 | __...... | 6 | 75 |
| MIMAT0004102 | mdo-miR-124a-3p | 3 | __...... | 8 | 75 |
| MIMAT0003995 | sme-miR-124c-3p | 2 | __...... | 7 | 75 |
| MIMAT0003993 | sme-miR-124b-3p | 2 | __...... | 7 | 75 |
| MIMAT0003992 | sme-miR-124a-3p | 2 | __...... | 7 | 75 |
| MIMAT0012101 | sme-miR-13-5p | 8 | _......_ | 3 | 75 |
| MIMAT0012088 | sme-let-7c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0003848 | bta-miR-532 | 8 | __...... | 3 | 75 |
| MIMAT0003811 | bta-miR-124a | 2 | __...... | 7 | 75 |
| MIMAT0004198 | bmo-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0003683 | xtr-miR-124 | 3 | __...... | 8 | 75 |
| MIMAT0003469 | mmu-miR-690 | 1 | _......_ | 6 | 75 |
| MIMAT0002897 | tni-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0002896 | fru-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0002889 | mmu-miR-532-5p | 8 | __...... | 3 | 75 |
| MIMAT0002888 | hsa-miR-532-5p | 8 | __...... | 3 | 75 |
| MIMAT0002878 | hsa-miR-506-3p | 2 | __...... | 7 | 75 |
| MIMAT0002471 | lla-miR-124a | 3 | __...... | 8 | 75 |
| MIMAT0002470 | mml-miR-124a-3p | 3 | __...... | 8 | 75 |
| MIMAT0002469 | ptr-miR-124a | 3 | __...... | 8 | 75 |
| MIMAT0002468 | ppy-miR-124a | 3 | __...... | 8 | 75 |
| MIMAT0002467 | ppa-miR-124a | 3 | __...... | 8 | 75 |
| MIMAT0002466 | age-miR-124a | 3 | __...... | 8 | 75 |
| MIMAT0002465 | ggo-miR-124a | 3 | __...... | 8 | 75 |
| MIMAT0002156 | ssc-miR-124a | 2 | __...... | 7 | 75 |
| MIMAT0031969 | dre-miR-130c-5p | 8 | ......__ | 3 | 75 |
| MIMAT0001819 | dre-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0001499 | aga-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0001473 | ame-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0001229 | dps-miR-124 | 2 | __...... | 7 | 75 |
| MIMAT0001174 | gga-miR-124b | 3 | __...... | 8 | 75 |
| MIMAT0026532 | gga-miR-130a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0001128 | gga-miR-124a-3p | 3 | __...... | 8 | 75 |
| MIMAT0000828 | rno-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0000494 | cbr-miR-124a | 2 | __...... | 7 | 75 |
| MIMAT0000422 | hsa-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0000351 | dme-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0000282 | cel-miR-124-3p | 2 | __...... | 7 | 75 |
| MIMAT0000134 | mmu-miR-124-3p | 2 | __...... | 7 | 75 |
