| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaacgtgc | 8 | ||
| MIMAT0034475 | eca-miR-8946 | 8 | ......._ | 2 | 87 |
| MIMAT0030487 | prd-miR-7871-3p | 7 | _....... | 1 | 87 |
| MIMAT0027715 | mmu-miR-6907-3p | 1 | _....... | 7 | 87 |
| MIMAT0019644 | pma-miR-4610 | 1 | _....... | 7 | 87 |
| MIMAT0006385 | mml-miR-519b | 1 | _....... | 7 | 87 |
| MIMAT0026872 | mml-miR-424-3p | 2 | ......._ | 8 | 87 |
| MIMAT0026851 | mml-miR-302a-5p | 2 | ......._ | 8 | 87 |
| MIMAT0037213 | ata-miR164a-3p | 2 | __...... | 7 | 75 |
| MIMAT0036223 | chi-miR-424-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035871 | bra-miR164e-3p | 2 | __...... | 7 | 75 |
| MIMAT0035307 | gsa-lin-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033553 | sma-miR-8424-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033553 | sma-miR-8424-3p | 8 | ......__ | 3 | 75 |
| MIMAT0033380 | str-miR-8372-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032745 | ssa-miR-2184-3p | 6 | __...... | 1 | 75 |
| MIMAT0030834 | prd-miR-7966b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0030749 | prd-miR-7944-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030720 | prd-miR-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0029626 | crm-miR-7608 | 7 | ......__ | 2 | 75 |
| MIMAT0028437 | mmu-miR-7234-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026466 | sbi-miR5568g-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027435 | hsa-miR-6767-3p | 3 | __...... | 8 | 75 |
| MIMAT0027259 | pgi-miR6138 | 7 | ......__ | 2 | 75 |
| MIMAT0023162 | gma-miR5765 | 3 | ......__ | 8 | 75 |
| MIMAT0022501 | hsa-miR-5707 | 6 | ......__ | 1 | 75 |
| MIMAT0022336 | cin-miR-4179b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0021492 | asu-miR-100c-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019638 | pma-miR-4604 | 1 | __...... | 6 | 75 |
| MIMAT0018257 | gma-miR1520i | 1 | _......_ | 6 | 75 |
| MIMAT0018058 | dme-miR-3642-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017926 | aly-miR4237 | 1 | ......__ | 6 | 75 |
| MIMAT0016807 | cin-miR-4189-5p | 1 | __...... | 6 | 75 |
| MIMAT0016659 | cin-miR-4085-5p | 8 | __...... | 3 | 75 |
| MIMAT0014777 | api-miR-3039 | 3 | ......__ | 8 | 75 |
| MIMAT0014525 | tgu-miR-2989 | 6 | __...... | 1 | 75 |
| MIMAT0014441 | cqu-miR-1889-3p | 6 | _......_ | 1 | 75 |
| MIMAT0014234 | aae-miR-1889-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015319 | zma-miR164g-3p | 2 | __...... | 7 | 75 |
| MIMAT0015318 | zma-miR164f-3p | 2 | __...... | 7 | 75 |
| MIMAT0013969 | bhv1-miR-B7 | 6 | _......_ | 1 | 75 |
| MIMAT0013921 | ssc-miR-424-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015304 | bta-miR-424-3p | 3 | ......__ | 8 | 75 |
| MIMAT0011550 | crm-miR-52-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009805 | nve-miR-2041a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006745 | cfa-miR-424 | 3 | ......__ | 8 | 75 |
| MIMAT0007713 | gga-miR-1798-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005544 | mcmv-miR-M23-2-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005386 | cre-miR1148.1 | 3 | _......_ | 8 | 75 |
| MIMAT0004416 | rrv-miR-rR1-7-3p | 7 | __...... | 2 | 75 |
| MIMAT0002094 | ptc-miR478n | 2 | _......_ | 7 | 75 |
| MIMAT0002093 | ptc-miR478s | 2 | _......_ | 7 | 75 |
| MIMAT0002092 | ptc-miR478r | 2 | _......_ | 7 | 75 |
| MIMAT0002091 | ptc-miR478q | 2 | _......_ | 7 | 75 |
| MIMAT0002090 | ptc-miR478p | 2 | _......_ | 7 | 75 |
| MIMAT0002089 | ptc-miR478o | 2 | _......_ | 7 | 75 |
| MIMAT0002087 | ptc-miR478m | 2 | _......_ | 7 | 75 |
| MIMAT0002086 | ptc-miR478l | 2 | _......_ | 7 | 75 |
| MIMAT0002085 | ptc-miR478k | 2 | _......_ | 7 | 75 |
| MIMAT0002084 | ptc-miR478j | 2 | _......_ | 7 | 75 |
| MIMAT0002083 | ptc-miR478i | 2 | _......_ | 7 | 75 |
| MIMAT0002082 | ptc-miR478h | 2 | _......_ | 7 | 75 |
| MIMAT0004749 | hsa-miR-424-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020311 | cel-miR-52-3p | 6 | _......_ | 1 | 75 |
