| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaagata | 7 | ||
| MIMAT0030305 | bdi-miR7776-3p.1 | 1 | ....... | 7 | 100 |
| MIMAT0028624 | mdo-miR-7312-5p | 1 | ....... | 7 | 100 |
| MIMAT0028597 | mdo-miR-7302-3p | 7 | ....... | 1 | 100 |
| MIMAT0027327 | ppe-miR6292 | 7 | ....... | 1 | 100 |
| MIMAT0019732 | hsa-miR-4662a-3p | 1 | ....... | 7 | 100 |
| MIMAT0016656 | cin-miR-4083-3p | 7 | ....... | 1 | 100 |
| MIMAT0017683 | aly-miR773b-5p | 7 | ....... | 1 | 100 |
| MIMAT0012869 | hvt-miR-H15-3p | 2 | ....... | 8 | 100 |
| MIMAT0012520 | dsi-miR-2582a-3p | 7 | ....... | 1 | 100 |
| MIMAT0012152 | sme-miR-2161-5p | 8 | ....... | 2 | 100 |
| MIMAT0005546 | mcmv-miR-M44-1 | 7 | ....... | 1 | 100 |
| MIMAT0020348 | cel-miR-787-5p | 1 | ....... | 7 | 100 |
| MIMAT0003428 | rlcv-miR-rL1-2-3p | 7 | ....... | 1 | 100 |
| MIMAT0000997 | ebv-miR-BHRF1-2-3p | 7 | ....... | 1 | 100 |
| MIMAT0036985 | tae-miR9774 | 2 | _...... | 7 | 85 |
| MIMAT0035470 | sly-miR9476-3p | 3 | ......_ | 8 | 85 |
| MIMAT0034454 | eca-miR-8926 | 3 | ......_ | 8 | 85 |
| MIMAT0034251 | gra-miR7492o | 3 | ......_ | 8 | 85 |
| MIMAT0034159 | gra-miR8742b | 6 | _...... | 1 | 85 |
| MIMAT0034158 | gra-miR8742a | 6 | _...... | 1 | 85 |
| MIMAT0034045 | gra-miR8673 | 1 | _...... | 6 | 85 |
| MIMAT0033151 | ppc-miR-8310-3p | 6 | _...... | 1 | 85 |
| MIMAT0032389 | ssa-miR-153a-2-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030841 | prd-miR-7969-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030152 | bdi-miR7715-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030106 | bdi-miR5174d-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028632 | mdo-miR-7316-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028380 | mml-miR-7207-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027837 | mmu-miR-6967-3p | 8 | ......_ | 3 | 85 |
| MIMAT0022120 | osa-miR5487 | 1 | ......_ | 6 | 85 |
| MIMAT0022011 | aca-miR-5401 | 7 | _...... | 2 | 85 |
| MIMAT0021686 | sbi-miR5388 | 6 | ......_ | 1 | 85 |
| MIMAT0021607 | gma-miR5370 | 3 | ......_ | 8 | 85 |
| MIMAT0021072 | gma-miR5042-5p | 6 | _...... | 1 | 85 |
| MIMAT0020504 | dme-miR-4911-3p | 6 | ......_ | 1 | 85 |
| MIMAT0019991 | cel-miR-4808-5p | 3 | _...... | 8 | 85 |
| MIMAT0019736 | hsa-miR-4662b | 1 | ......_ | 6 | 85 |
| MIMAT0018911 | tca-miR-3904-5p | 1 | _...... | 6 | 85 |
| MIMAT0016839 | cin-miR-4217-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016752 | cin-miR-4149-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017902 | rno-miR-741-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017640 | aly-miR852-3p | 1 | _...... | 6 | 85 |
| MIMAT0015394 | bmo-miR-3214 | 1 | _...... | 6 | 85 |
| MIMAT0015030 | hsa-miR-3156-5p | 1 | ......_ | 6 | 85 |
| MIMAT0013849 | bta-miR-2891 | 6 | ......_ | 1 | 85 |
| MIMAT0013683 | bmo-miR-2787-5p | 6 | _...... | 1 | 85 |
| MIMAT0013631 | bmo-miR-2759 | 3 | ......_ | 8 | 85 |
| MIMAT0012616 | bmo-miR-2738 | 6 | ......_ | 1 | 85 |
| MIMAT0013573 | cte-miR-2706 | 2 | _...... | 7 | 85 |
| MIMAT0011993 | bta-miR-2424 | 8 | ......_ | 3 | 85 |
| MIMAT0011179 | osa-miR2120 | 1 | ......_ | 6 | 85 |
| MIMAT0007785 | osa-miR1428e-3p | 2 | _...... | 7 | 85 |
| MIMAT0007783 | osa-miR1428d | 2 | _...... | 7 | 85 |
| MIMAT0007782 | osa-miR1428c | 2 | _...... | 7 | 85 |
| MIMAT0007781 | osa-miR1428b | 2 | _...... | 7 | 85 |
| MIMAT0007616 | gga-miR-1719 | 1 | ......_ | 6 | 85 |
| MIMAT0007280 | osa-miR1428a-3p | 2 | _...... | 7 | 85 |
| MIMAT0004275 | ath-miR852 | 1 | _...... | 6 | 85 |
